2012 Publications by CMS Faculty

ST. PETERSBURG - Compiled below are the publications for all USFCMS faculty in 2012.


Ainsworth, C. H., H. Morzaria-Luna, I. C. Kaplan, P. Levin, E. A. Fulton, R. Cudney-Bueno, P. Turk-Boyer, J. Torre, G. Danneman, and T. Pfister (2012) Effective ecosystem-based management must encourage regulatory compliance: A Gulf of California case study. Marine Policy, 36, 1275-1283.

Ainsworth, C. H., H. Morzaria-Luna, I. C. Kaplan, P. S. Levin, and E. A. Fulton (2012) Full compliance with harvest regulations yields ecological benefits: Northern Gulf of California case study. Journal of Applied Ecology, 49, 63-72.

Morzaria-Luna, H., C. H. Ainsworth, I. C. Kaplan, P. Levin, and E. Fulton (2012) Exploring trade-offs between fisheries and conservation of the vaquita porpoise (Phocoena sinus) using an Atlantis ecosystem model. PLoS ONE, 7(8), e42917. doi:10.1371/journal.pone.0042917.

Varkey, D., C. H. Ainsworth, and T. J. Pitcher (2012) Modeling reef fish population responses to fisheries restrictions in Marine Protected Areas in the Coral Triangle. Journal of Marine Biology, DOI: 10.1155/2012/721483.

Rosario, K., A. Dayaram, M. Marinov, J. Ware, S. Kraberger, D. Stainton, M. Breitbart, and A. Varsani (2012) Diverse circular single-stranded DNA viruses discovered in dragonflies (Odonata: Epiprocta). Journal of General Virology, 93, 2668-2681.

Rosario, K., S. Duffy, and M. Breitbart (2012) A field guide to eukaryotic circular single-stranded DNA viruses: Insights gained from metagenomics. Archives of Virology, 157, 1851-1871.

Nitti, A., C. Daniels, J. Siefert, V. Souza, D. Hollander, and M. Breitbart (2012) Spatially resolved genomic, stable isotopic, and lipid analyses of a modern freshwater microbialite from Cuatro Cienegas, Mexico. Astrobiology, 12, 685-698.

Daniels, C. and M. Breitbart (2012) Bacterial communities associated with the ctenophores Mnemiopsis leidyi and Beroe ovata. FEMS Microbiology Ecology, 82, 90-101.

Dwivedi, B., R. Schmieder, D. B. Goldsmith, R. A. Edwards, and M. Breitbart (2012) PhiSiGns: an online tool to identify signature genes in phages and design PCR primers for examining phage diversity. BMC Bioinformatics, 13, 37.

Breitbart, M. (2012) Marine viruses: truth or dare. Annual Review of Marine Science, 4, 425-448.

Parsons, R. J., M. Breitbart, M. W. Lomas, and C. A. Carlson (2012) Ocean time-series reveals recurring seasonal patterns of virioplankton dynamics in the northwestern Sargasso Sea. ISME Journal, 6, 273-284.

Feely, R. A., C. L. Sabine, R. H. Byrne, F. J. Millero, A. G. Dickson, R. Wanninkhof, A. Murata, L. A. Miller, and D. Greeley (2012) Decadal changes in the aragonite and calcite saturation state of the Pacific Ocean. Global Biogeochemical Cycles, 26, GB3001, doi: 10.1029/2011GB004157.

Mathis, J. T., R. S. Pickart, R. H. Byrne, C. L. McNeil, G. W. K. Moore, L. W. Juranek, X. Liu, J. Ma, R. A. Easley. M. M. Elliott, J. N. Cross, S. C. Reinsdorph, F. Bahr, J. Morison, T. Lichendorf, and R. Feely (2012) Storm-induced upwelling of high pCO2 waters onto the continental shelf of the western Arctic Ocean and implications for carbonate mineral saturation states. Geophysical Research Letters, 39, L07606, doi: 10.1029/2012GL051574.

Easley, R. A. and R. H. Byrne (2012) Spectrophotometric calibration of pH electrodes in seawater using purified m-cresol purple. Environmental Science and Technology, 46, 5018–024, dx.doi.org/10.1021/es300491s.

Ma, J., B. Yang, and R. H. Byrne (2012) Determination of nanomolar chromate in drinking water with solid phase extraction and a portable spectrophotometer. Journal of Hazardous Materials, 219-220, 247–252.

Bell, R. J., W. B. Savidge, S. K. Toler, R. H. Byrne, and R.T. Short (2012) In situ determination of porewater gases by underwater flow-through membrane inlet spectrometry. Limnology and Oceanography: Methods, 10, 117–128.

Ma, J. and R. H. Byrne (2012) Flow injection analysis of nanomolar silicate using long pathlength absorbance spectroscopy. Talanta, 88, 484-489.

Chambers, D. P., M. A. Merrifield, and R. S. Nerem (2012) Is there a 60-year oscillation in global mean sea level?. Geophys. Res. Lett., 39, L18607, doi:10.1029/2012GL052885.

Calafat, F. M., D. P. Chambers, and M. N. Tsimplis (2012) Mechanisms of decadal sea level
variability in the eastern North Atlantic and the Mediterranean Sea. J. Geophys. Res., 117, C09022, doi:10.1029/2012JC008285.

Chambers, D. P., and J. A. Bonin (2012) Evaluation of Release-05 GRACE time-variable gravity coefficients over the ocean. Ocean Science, 8, 1–10, www.ocean-sci.net/8/1/2012/doi:10.5194/os-8-1-2012.

Halpern, B. S., C. Longo, D. Hardy, K. McLeod, J. F. Samhouri, S. K. Katona, K. Kleisner, S. E. Lester, J. O'Leary, M. Ranelletti, A. A. Rosenberg, C. Scarborough, E. Selig, B. Best, D. Brumbaugh, F. S. Chapin, L. Crowder, K. L. Daly, S. Doney, M. J. Fogarty, S. D. Gaines, K. Jacobsen, L. B. Karrer, H. M. Leslie, D. Pauly, S. Polasky, K. St. Martin, G. S. Stone, U. R. Sumaila, H. Tallis, and D. Zeller (2012) An Ocean Health Index: quantifying and mapping the health of global marine ecosystems. Nature, 488, 615-620_10.1038/nature11397. [Smithsonian rated this paper one of the 10 best ocean stories of the year. http://blogs.smithsonianmag.com/science/2012/12/the-ten-best-ocean-stories-of-2012/]

Murphy, E. J., R. D. Cavanagh, E. E. Hofmann, S. L. Hill, A. J. Constable, D. P. Costa, M. H. Pinkerton, N. M. Johnston, P. N. Trathan, J. M. Klinck, D. A. Wolf-Gladrow, K. L. Daly, O. Maury, and S. C. Doney (2012) Developing integrated models of Southern Ocean food webs: including ecological complexity, accounting for uncertainty and the importance of scale. Progress in Oceanography, 102, 74–92.

Fefilatyev, S., M. Shreve, K. Kramer, L. Hall, D. Goldgof, R. Kasturi, K. Daly, A. Remsen, and H. Bunke (2012) Label-Noise Reduction with Support Vector Machines. International Conference on Pattern Recognition. Nov. 11-15, Tsukuba, Japan. Journal of Machine Learning Research. [student in Computer Sciences lead author; I was lead PI on grant]

Witham, F., J. D. Blundy, S. C. Dohn, P. Lesne, J. E. Dixon, S. Churakov, and R. Botcharnikov (2012) SolEx: A model for mixed COHSCl-fluid solubilities and exsolved gas compositions in basalt. Computers & Geosciences, 45, 87-97. (3 citations)

Dixon, J. E., Working towards a sustainable global ocean: Research highlights at the College of Marine Science, University of South Florida. Global Scientia, 1, 12-15. (0 citations)

Podlaska A., S. G. Wakeham, K. A. Fanning, and G. T. Taylor (2012) Microbial community structure and chemoautotrophic activity in the oxygen minimum zone of the eastern tropical North Pacific. Deep-Sea Research Part I, 66, 77-89, doi:10.1016/j.dsr.2012.04.002.

Sukoriansky, S., N. Dikovskaya, R. Grimshaw, and B. Galperin (2012) Rossby waves and zonons in zonostrophic turbulence. AIP Conf. Proc., 1439, 111-122, doi: 10.1063/1.3701355.

Lorenzoni, L., C. Benitez-Nelson, R. C. Thunell, D. Hollander, R. Varela, Y. Astor, and F. E. Muller-Karger (2012) Potential role of event-driven sediment transport on sediment accumulation in the Cariaco Basin, Venezuela. Mar. Geol. doi:10.1016/j.margeo.2011.12.009.

Montes, E., F. Muller-Karger, R. C. Thunell, D. Hollander, Y. Astor, R. Varela, I. Soto and L. Lorenzoni (2012) Vertical fluxes of particulate biogenic material through the euphotic and twilight zones in the Cariaco Basin, Venezuela. Deep-Sea Res. I, 67, 73-84. DOI: 10.1016/j.dsr.2012.05.005.

Richey, J. N, R. Z. Poore, B. P. Flower, and D. J. Hollander (2012) Ecological controls on the shell geochemistry of pink and white Globigerinoides ruber in the northern Gulf of Mexico: Implications for paleoceanographic reconstruction. Marine Micropaleontology, doi:10.1016/j.marmicro.2011.10.002

Joye, S. B., I. Leifer, I. R. MacDonald, J. P. Chanton, C. D. Meile, A. P. Teske, J. E. Kostka, L. Chistoserdova, R. Coffin, D. J. Hollander, M. Kastner, J. P. Montoya, G. Reheder, E. Solomon, T. Treude, and T.A. Villareal (2011), Technical Comment on "A Persistent Oxygen Anomaly Reveals the Fate of Spilled Methane in the Deep Gulf of Mexico" by Kessler et al., Science, 332/6033 DOI: 10.1126/science.1203307 (Appeared January 2012).

Richey, J., B. Flower, D. J. Hollander, and T. Eglinton (2011), Merging Molecular Organic and Foraminiferal-Based Sedimentary Geochemical Records of Gulf of Mexico SST, Paleoceanography, doi:10.1029/2010PA002000 (Appeared March 2012).

Fishman, J., L. T. Iraci, J. Al-Saadi, K. Change, F. Chavez, M. Chin, P. Coble, C. Davis, P. M.
DiGiacomo, D. Edwards, A. Eldering, J. Goes, J. Herman, C. Hu, D. J. Jacob, C. Jordan,
S. R. Kawa, R. Key, X. Liu, S. Lohrenz, A. Mannino, V. Natraj, D. Neil, J. Neu, M.
Newchurch, K. Pickering, J. Salisbury, H. Sosik, A. Subramaniam, M. Tzortziou, J. Wang,
and M. Wang (2012) The United States' next generation of atmospheric composition and
coastal ecosystem measurement: NASA's Geostationary Coastal and Air Pollution Events
(GEO-CAPE) Mission. BAMS, October 2012, 1547-1566, DOI:10.1175/BAMS-D-11-
00201.1. [Impact factor: 6.026]

Hu, C., L. Feng, and Z. Lee (2012) Evaluation of GOCI sensitivity for at-sensor radiance and
GDPS-retrieved chlorophyll-a products. Ocean Science Journal, 47, 279-285.

Duan, H., R. Ma, and C. Hu (2012) Evaluation of remote sensing algorithms for cyanobacterial
pigment retrievals during spring bloom formation in several lakes of East China. Remote
Sens. Environ., 126, 126-135. [Impact factor: 4.574]

Hu, C., L. Feng, Z. Lee, C. O. Davis, A. Mannino, C. R. McClain, and B. A. Franz (2012)
Dynamic range and sensitivity requirements of satellite ocean color sensors: learning from
the past. Appl. Opt., 51, 6045-6062. [Impact factor: 1.748]

Lee, Z., C. Hu, R. Arnone, and Z. Liu (2012) Impact of sub-pixel variations on ocean color remote sensing products. Opt. Express, 20, 20,844-20,854. [Impact factor: 3.587]

Feng, L., C. Hu, and X. Chen (2012). Satellites capture the drought severity around China's
largest freshwater lake. IEEE Journal of Selected Topics in Applied Earth Observations
and Remote Sensing, 5,1266-1271. [Impact factor: 1.489]

Feng, L., C. Hu, X. Chen, L. Tian, and L. Chen (2012) Human induced turbidity changes in
Poyang Lake between 2000 and 2010: Observations from MODIS. J. Geophys. Res., 117,
C07006, doi:10.1029/2011JC007864. [Impact factor: 3.021]

Chollett, I., P. J. Mumby, F. E. Muller-Karger, and C. Hu (2012) Physical environments of the
Caribbean Sea. Limnol. Oceanogr., 57,1233-1244. [Impact factor: 3.416]

Feng, L., C. Hu, X. Chen, X. Cai, L. Tian, and W. Gan (2012) Assessment of inundation changes of Poyang Lake using MODIS observations between 2000 and 2010. Remote Sensing of Environment, 121, 80-92. [Impact factor: 4.574]

Hu, C., Z. Lee, and B. Franz (2012) Chlorophyll a algorithms for oligotrophic oceans: A novel
approach based on three-band reflectance difference. J. Geophys. Res., 117, C01011,
doi:10.1029/2011JC007395. [Impact factor: 3.021]

Arnott, K. D., A. Valle-Levinson, and M. E. Luther (2012) Friction-dominated exchange in a Florida estuary. Estuarine, Coastal and Shelf Science, 113, 248-258.

Rowell, T. J., M. T. Scharer, R. S. Appeldoorn, M. I. Nemeth, D. A. Mann, and J. A. Rivera (2012) Sound production as an indicator of red hind density at a spawning aggregation. Mar. Ecol. Prog. Ser., 462, 241-250.

Wall, C. C., C. Lembke, and D. Mann (2012) Shelf-scale mapping of sound production by fishes in the eastern Gulf of Mexico, using autonomous glider technology. Mar. Ecol. Prog. Ser., 449, 55-64.

Locascio, J., and D. Mann (2012) Quantitative and temporal relationships of egg production and sound production by black drum, Pogonia cromis. J. Fish. Biol., DOI: 10.1111/j.1095-8649.2012.03376.x

Scharer, M. T., M. I. Nemeth, D. Mann, J. Locascio, R. S. Appeldoorn, T. J. and Rowell (2012) Sound production and reproductive behavior of yellowfin grouper, Mycteroperca venenosa (Serranidae) at a spawning aggregation. Copeia, 136-145.

Martin, K, S. Alessi, J. Gaspard, A. Tucker, G. Bauer, and D. Mann (2012) Underwater hearing in the loggerhead turtle (Caretta caretta): a comparison of behavioral and auditory evoked potential audiograms. J. Exp. Biol. 215, 3001-3009.

Webb, J., R. M. Walsh, B. Casper, D. A. Mann, N. Kelly, and N. Cicchino (2012) Development of the ear, hearing capabilities and laterophysic connection in the spotfin butterflyfish (Chaetodon ocellatus). Env. Biol. Fish., DOI 10.1007/s10641-012-9991-7.

Bauer, G. B., J. C. Gaspard III, D. E. Colbert, J. B. Leach, S. A. Stamper, D. Mann, and R. Reep (2012) Tactile discrimination of textures by Florida manatees (Trichechus manatus latirostris). Mar. Mam. Sci., DOI: 10.1111/j.1748-7692.2012.00565.x

Gaspard, J.C., G. B. Bauer, R. L. Reep, K. Dziuk, A. Cardwell, L. Read, D. A. Mann (2012) Audiogram and auditory critical ratios of two Florida manatees (Trichechus manatus latirostris). J. Exp. Biol. 215, 1442-1447.

Merrifield, M. A., P. Thompson, D. P. Chambers, G. T. Mitchum, M. Menéndez, R. S. Nerem, E. Leuliette, L. Miller, S. Holgate, J. J. Marra, and W. Sweet (2012) Sea level variability and change, in "State of the Climate in 2011", Bull. Amer. Met. Soc., 93(7), S81-84.

Ayoub, L. M., P. Hallock, P. G. Coble, S. S. Bell (2012) MAA-like absorbing substances in Florida Keys phytoplankton vary with distance from shore and CDOM: Implications for coral reefs. JEMBE, 420, 91-98. DOI: 10.1016/j.jembe.2012.03.026. – Impact Factor: 1.875

Hallock, P. (2012) The FORAM Index revisited:Usefulness, challenges and limitations. Proc. International Coral Reef Symposium, Cairns, Australia, July 9-13, 2012.

Morsilli, M., F. R. Bosellini, L. Pomar, P. Hallock, M. Aurell, and C. A. Papazzoni (2012.) Mesophotic coral buildups in a prodelta setting (Late Eocene, southern Pyrenees, Spain): a mixed carbonate–siliciclastic system. Sedimentology, 59, 766-794. DOI: 10.1111/j.1365-3091.2011.01275.x – Impact Factor: 2.295

Pomar, L., M. Morsilli, P. Hallock, and B. Bádenas (2012) Internal waves, an under-explored source of turbulence events in the sedimentary record. Earth-Science Reviews, 111(1-2), 56-81. DOI: 10.1016/j.earscirev.2011.12.005. – Impact Factor: 6.594

Triantaphyllou, M. V., M. D. Dimiza, O. Koukousioura, and P. Hallock (2012) Observations on the life cycle of the symbiont-bearing foraminifer Amphistegina lobifera Larsen, an invasive species in coastal ecosystems of the Aegean Sea (Greece, E Mediterranean). Journal of Foraminiferal Research, 42(2), 143-150. – Impact Factor: 1.69

Cett, I., P. J. Mumby, F. E. Müller-Karger, and C. Hu (2012) Physical environments of the Caribbean Sea. Limnology and Oceanography. Limnol. Oceanogr., 57(4), 1233–1244. doi:10.4319/lo.2012.57.4.1233.

Chollett, I., F. E. Müller-Karger, S. F. Heron, W. Skirving, and P. J. Mumby (2012) Seasonal and spatial heterogeneity of recent sea surface temperature trends in the Caribbean Sea and southeast Gulf of Mexico. Marine Pollution Bulletin, http://dx.doi.org/10.1016/j.marpolbul.2012.02.016.

Lindo-Atichati, D., F. Bringas, G. Goni, B. Muhling, F. E. Muller-Karger, and S. Habtes (2012) Variability of mesoscale structures with effects on larval fish distribution in the northern Gulf of Mexico during spring months. Marine Ecology Progress Series, Vol. 463, 245–257, doi:10.3354/meps09860.

Muhling, B. A., M. A. Roffer, J. T. Lamkin, G. W. Ingram Jr., M. A. Upton, G. Gawlikowski, F. Muller-Karger, S. Habtes, W. J. Richards (2012) Overlap between Atlantic bluefin tuna spawning grounds and observed Deepwater Horizon surface oil in the northern Gulf of Mexico. Mar. Pollut. Bull., doi:10.1016/j.marpolbul.2012.01.034.

Muller-Karger, F., K. Fanning, A. Hine, W. Hogarth, and J. Dixon (2010) (published 2012) The College of Marine Science at the University of South Florida. Gulf of Mexico Science. Vol. XXVIII, No. 1-2. p. 164-172.

Soto-Ramos, I. M., C. Hu, K. A. Steidinger, F. Muller-Karger, J. Cannizzaro, J. Wolny, S. Cerdeira-Estrada, E. Santamaria-del-Angel, F. Tafoya-del-Angel, P. Alvarez-Torres, J. Herrera-Silveira, and J. Allen (2012) Bi-National Collaborations on Harmful Algal Blooms Research in the Gulf of Mexico. Eos AGU Transactions. Eos, 93(5), 31. 0. 49-50.

Taylor, G. T., F. E. Muller-Karger, R. C. Thunell, M. I. Scranton, Y. Astor, R. Varela, L. T. Ghinaglia, L. Lorenzoni, K. A. Fanning, S. Hameed, and O. Doherty (2012) Ecosystem responses in the southern Caribbean Sea to global climate change. PNAS, 109(47), 19315–19320.

McNutt, M. K., S. Chu, J. Lubchenco, T. Hunter, G. Dreyfus, S. A. Murawski, and D. M. Kennedy (2012) Applications of science and engineering to quantify and control the Deepwater Horizon oil spill. Proceedings of the National Academy of Sciences, 109(50), 20222.

Lubchenco, J., M. K. McNutt, G. Dreyfus, S. A. Murawski, D. M. Kennedy, P. T. Anastas, S. Chu, and T. Hunter (2012). Science in Support of the Deepwater Horizon Response. Proceedings of the National Academy of Sciences, 109(50), 20212.

Murawski, S. A., M. P. Sissenwine, P. Mace, W. Hogarth (2012) Rebuilding Depleted Fishery Stocks Under Environmental Variation: A Flexible Approach to MSY Biomass Targets. ICES CM 2012/L:11.

Allee, R. J., A. W. David, and D. F. Naar (2012) Ch. 30: Two Shelf Edge Marine Protected Areas in the Eastern Gulf of Mexico. In Seafloor Geomorphology as Benthic Habitat: GeoHab Atlas of seafloor geomorphic features and benthic habitats. (Harris, P. T. and Baker, E. D., eds.), Elsevier, Amsterdam, 435-448, ISBN: 978-0-12-385140-6.

Wright, D. J., J. T. Roberts, D. Fenner, J. R. Smith, A. P. Koppers, D. F. Naar, E. R. Hirsch, L. W. Clift, and K. R. Hogrefe (2012) Ch. 58: Seamounts, Ridges, and Reef Habitats of American Samoa. In Seafloor Geomorphology as Benthic Habitat: GeoHab Atlas of seafloor geomorphic features and benthic habitats. (Harris, P. T. and Baker, E. D., eds.), Elsevier, Amsterdam, 791-806, ISBN: 978-0-12-385140-6.

Ray, J. S., J. J. Mahoney, R. A. Duncan, J. Ray, P. Wessel, and D. F. Naar (2102) Chronology and geochemistry of lavas from the Nazca Ridge and Easter Seamount Chain: a ~30 Myr hotspot record, Journal of Petrology, 53(7), 1417-1448, doi:10.1093/petrology/egs021.

John, D. E., J. E. Corredor, J. M. Lopez, A. Cabrera, and J. H. Paul (2012) A day in the life in the dynamic marine environment: how nutrients shape diel patterns of phytoplankton photosynthesis and carbon fixation gene expression in the Mississippi and Orinoco River plumes, Hydrobiologia, 679, 155–173.

McDaniel, L. D., E. C. Young, K. B. Ritchie, and J. H. Paul (2012) Environmental Factors Influencing Gene Transfer Agent (GTA) Mediated Transduction in the Subtropical Ocean. PLoS ONE, 7(8): e43506. doi:10.1371/journal.pone.0043506.

Radabaugh, K. R and E. B. Peebles (2012) Detection and classification of phytoplankton deposits along an estuarine gradient. Estuaries and Coasts, 35: 1361-1375. 4

Tolley, S. G., B. M. Brosious, J. T. Evans, J. L. Nelson, L. H. Haynes, L. K. Heine, S. E. Burghart and E. B. Peebles (2012) Freshwater inflow effects on larval fish and crab settlement onto oyster reefs. Journal of Shellfish Research, 31, 895-908.

Radabaugh, K. R and E. B. Peebles (2012) Detection and classification of phytoplankton deposits along an estuarine gradient. Estuaries and Coasts, 35, 1361-1375. 4

Tolley, S. G., B. M. Brosious, J. T. Evans, J. L. Nelson, L. H. Haynes, L. K. Heine, S. E. Burghart and E.B. Peebles (2012) Freshwater inflow effects on larval fish and crab settlement onto oyster reefs. Journal of Shellfish Research, 31, 895-908.

Shevenell, A. E. and S. M. Bohaty (2012) Southern exposure: New paleoclimate insights from Southern Ocean and Antarctic margin sediments. Oceanography, 25(3), 106–117, http://dx.doi.org/10.5670/oceanog.2012.82.

Liu, Z., L. Fan, S.-I. Shin, and Q. Liu (2012) Assessing atmospheric response to surface forcing in the observation: Part II: Cross-validation of seasonal response using GEFA and LIM. Journal of Climate, 25, 6817-6834.

Stallings, C. D. and A. L. Dingeldein (2012) Intraspecific cooperation facilitates synergistic predation. Bulletin of Marine Science, 88, 317-318.

Hixon, M. A., T. W. Anderson, K. L. Buch, D. W. Johnson, J. B. McLeod and C. D. Stallings (2012) Density dependence and population regulation in marine fish: a large-scale, long-term field manipulation. Ecological Monographs, 82, 467-489.
Note 1: author contributions were equal (indicated in paper acknowledgements)
Note 2: selected as the cover article.

Torres J. J., M. D. Grigsby, and M. E. Clarke (2012) Aerobic and anaerobic metabolism in oxygen minimum layer fishes: the role of alcohol dehydrogenase. Journal of Experimental Biology, 215, 1905-1914.

Broadbent H. A., T. P. Ketterl, A. M. Silverman, and J. J. Torres (2012) Development of a CTD biotag: Challenges and Pitfalls. Deep-Sea Research II, http://dx.doi.org/10.1016/j.dsr2.2012.07.030.

Saba, G. K., O. Schofield, J. J Torres, E. H. Ombres, and D. K. Steinberg (2012) Increased feeding and nutrient excretion of adult Antarctic krill, Euphausia superba, exposed to enhanced carbon dioxide (CO2) PLOS ONE, 7(12) e52224.

Walsh, J. J., J. M. Lenes, B. P. Darrow, and F. R. Chen (2012) Forecasting and modeling of harmful algal blooms in the coastal zone. In "Volume 9, Estuarine and Coastal Ecosystem Modeling, of the Treatise on Estuarine and Coastal Science", eds. D. Baird and A. Mehta, Elsevier, pp 217-330.

Lenes, J. M., J. M. Prospero, W. M. Landing, J. J. Virmani, and J. J. Walsh (2012) A model of Saharan dust deposition to the eastern Gulf of Mexico. Mar. Chem., 134, 1-9.

Zheng, L. and R. H. Weisberg (2012) Modeling the West Florida Coastal Ocean by Downscaling from the Deep Ocean, Across the Continental Shelf and into the Estuaries, Ocean Modeling, 48, 10-29, doi:10.1016/j.ocemod.2012.02.002.

Lenes, J. M., B. P. Darrow, J. J. Walsh, J. K. Jolliff, F. R. Chen, R. H. Weisberg, and L. Zheng (2012) A 1-D simulation analysis of the development and maintenance of the 2001 red tide of the ichthyotoxic dinoflagellate Karenia brevis on the West Florida shelf. Cont. Shelf Res., 41, 92-100, doi:10.1016/j.csr.2012.04.007.

Liu, Y., R. H. Weisberg, S. Vignudelli, L. Roblou and C. R. Merz (2012) Comparison of the XTRACK Altimetry Estimated Currents with Moored ADCP and HF radar Observations on the West Florida Shelf, Advances in Space Research, 50, 1085-1098, doi:10.1016/j.asr.2011.09.012.

Liu, Y. and R. H. Weisberg (2012) Seasonal Variability on the West Florida Shelf. Prog. Oceanogr., 104, 80-98, doi:10.1016/j.pocean.2012.06.001.

Weisberg, R. H., Y. Liu, C. R. Merz, J. I. Virmani, and L. Zheng (2012) A critique of alternative power generation for Florida by mechanical and solar means. Mar. Tech. Soc. J., 46, 5, 12-23, doi:10.4031/MTSJ.46.5.1.

Merz, C. R., R. H. Weisberg, and Y. Liu (2012) Evolution of the USF/CMS CODAR and WERA HF Radar Network, IEEE Oceans 2012, doi:10.1109/OCEANS.2012.6404947.

Merz, C. R.,W. M. Moreno, M. Barger, S. M. Lipka, Salinity Gradient Power (SGP): A developmental roadmap covering existing generation technologies and recent investigative results into the feasibility of bipolar memebrand-based salinity gradient power generation, Technology & Innovation, Volume 14, Numbers 3-4, December 2012, pp. 249-275(27).

Fefilatyev, S., D. Goldgof, M. Shreve, and C. Lembke (2012) Detection and tracking of ships in open sea with rapidly moving buoy-mounted camera system, Ocean Engineering, OE-D-11-00395R1.